CoE Publications 2017

Alirzayeva E, Neumann G, Horst W, Allahverdiyeva Y, Specht A, Alizade V (2017) Multiple mechanisms of heavy metal tolerance are differentially expressed in ecotypes of Artemisia fragrans. ENVIRONMENTAL POLLUTION 220: 1024-1035
http://dx.doi.org/10.1016/j.envpol.2016.11.041 [A1] (Epub 2016 Nov 24)

Bersanini L, Allahverdiyeva Y, Battchikova N, Heinz S, Lespinasse M, Ruohisto E, Mustila H, Nickelsen J, Vass I, Aro EM (2017) Dissecting the photoprotective mechanism encoded by the flv4-2 operon: a distinct contribution of Sll0218 in photosystem II stabilization. PLANT CELL ENVIRON 40(3):378-389
http://dx.doi.org/10.1111/pce.12872 [A1] (Epub 2016 Dec 7) open access

Fristedt R, Trotta A, Suorsa M, Nilsson AK, Croce R, Aro EM, Lundin B (2017) PSB33 sustains photosystem II D1 protein under fluctuating light conditions. J EXP BOT. 68(15): 4281-4293
https://doi.org/10.1093/jxb/erx218[A1] (Epub 2017 Jul 10) open access

Georg J, Kostova G, Vuorijoki L, Schön V, Kadowaki T, Huokko T, Baumgartner D, Müller M, Klähn S, Allahverdiyeva Y, Hihara Y, Futschik ME, Aro EM, Hess WR (2017) Acclimation of oxygenic photosynthesis to iron starvation is controlled by the sRNA IsaR1. CURRENT BIOLOGY 27: 1-12
http://dx.doi.org/10.1016/j.cub.2017.04.010[A1] (Epub 2017 May 5) open access

Giovanardi M, Poggioli M, Ferroni L, Lespinasse M, Baldisserotto C, Aro EM, Pancaldi S (2017) Higher packing of thylakoid complexes ensures a preserved Photosystem II activity in mixotrophic Neochloris oleoabundans. ALGAL RESEARCH 25:255-265 [A1] https://doi.org/10.1016/j.algal.2017.05.020[A1] open access

Gollan PJ, Lima-Melo Y, Tiwari A, Aro EM. 2017. Interaction between photosynthetic electron transport and chloroplast sinks triggers protection and signalling important for plant productivity. PHIL TRANS R SOC B (in press)
https://dx.doi.org/10.1098/rstb.2016.0390[A1] open access

Huokko T, Muth-Pawlak D, Battchikova N, Allahverdiyeva Y, Aro EM (2017) Role of type 2 NAD(P)H dehydrogenase NdbC in regulation of carbon allocation in Synechocystis 6803. PLANT PHYS 174(3):1863-1880
http://dx.doi.org/10.1104/pp.17.00398[A1] (Epub 2017 May 22) open access

Ilík P, Pavlovič A, Kouřil R, Alboresi A, Morosinotto T, Allahverdiyeva Y, Aro EM, Yamamoto H, Shikanai T (2017) Alternative electron transport mediated by ?avodiiron proteins is operational in organisms from cyanobacteria up to gymnosperms. NEW PHYTOL 214(3):967-972
http://dx.doi.org/10.1111/nph.14536[A1] (Epub 2017 Mar 17)

Jämsä M, Lynch F, Santana-Sánchez A, Laaksonen P, Zaitsev G, Solovchenko A, Allahverdiyeva Y (2017) Nutrient removal and biodiesel feedstock potential of green alga UHCC00027 grown in municipal wastewater under Nordic conditions. ALGAL RESEARCH (in press) [A1]

Järvi S, Rantala M, Aro EM. 2017. Oxygenic Photosynthesis - Light Reactions within the Frame of Thylakoid Architecture and Evolution. In: Barber J. and Ruban AV (eds.) Photosynthesis and Bioenergetics (in press)

Kaurilind E, Brosche M (2017) Stress Marker Signatures in Lesion Mimic Single and Double Mutants Identify a Crucial Leaf Age-Dependent Salicylic Acid Related Defense Signal. PLoS ONE 12:e0170532
http://dx.doi.org/10.1371/journal.pone.0170532[A1]

Koski T-M, Lindstedt C, Klemola T, Troscianko J, Mäntylä E, Tyystjärvi E, Stevens M, Helander M, Laaksonen T (2017) Insect herbivory may cause changes in the visual properties of leaves and affect the camouflage of herbivores to avian predators. BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY (in press)

Kosourov S, Murukesan G, Seibert M, Allahverdiyeva Y (2017) Evaluation of light energy to H2 energy conversion efficiency in thin films of cyanobacteria and green alga under photoautotrophic conditions. ALGAL RESEARCH (in press)

Kurkela J, Hakkila K, Antal T, Tyystjarvi T (2017) Acclimation to high CO2 requires the ? subunit of the RNA polymerase in Synechocystis. PLANT PHYSIOL 174(1):172-184
http://dx.doi.org/10.1104/pp.16.01953[A1] (Epub 2017 Mar 28)

Ling Y, Alshareef S, Butt H, Lozano-Juste J, Li L, Galal AA, Moustafa A, Momin AA, Tashkandi M, Richardson DN, Fujii H, Arold S, Rodriguez PL, Duque P, Mahfouz MM (2017) Pre-mRNA splicing repression triggers abiotic stress signaling in plants. PLANT JOURNAL 89(2):291-309
http://dx.doi.org/10.1111/tpj.13383 [A1] (Epub 2017 Jan 17)

Niemi M, Aro EM. 2017. Koulu-uudistuksen kä yntiinpanon unohdetut arkkitehdit. Tieteessä Tapahtuu 35(4):9-16
https://journal.fi/tt/article/view/64670 [D1] (Epub 2017 Jun 14)

Kämäräinen J, Huokko T, Kreula S, Jones PR, Aro EM, Kallio P (2017) Pyridine nucleotide transhydrogenase PntAB is essential for optimal growth and photosynthetic integrity under low-light mixotrophic conditions in Synechocystis sp. PCC 6803. NEW PHYTOL 214(1):194-204
http://dx.doi.org/10.1111/nph.14353 [A1] (Epub 2016 Dec 8)

Ojanen S, Tyystjärvi E, Holmberg H, Kouhia M, Ahtila P (2017) Can bacterial biofiltration be replaced by autotrophic organisms in recirculating fresh water aquaculture? AQUATIC INTERNATIONALpp 1-14
http://dx.doi.org/10.1007/s10499-017-0126-1[] (Epub 2017 Feb 18) open access

Otero S, Helariutta Y (2017) Companion cells: a diamond in the rough. J EXP BOT 68: 71-78
https://doi.org/10.1093/jxb/erw392[A2]

Patrikainen P, Carbonell V, Thiel K, Aro EM, Kallio P (2017) Comparison of orthologous cyanobacterial aldehyde deformylating oxygenases in the production of volatile C3-C7 alkanes in engineered E. coli. METABOLIC ENGINEERING COMMUNICATIONS 5: 9-18
https://doi.org/10.1016/j.meteno.2017.05.001[A1] open access

Rahikainen M, Alegre S, Trotta A, Pascual J, Kangasjärvi S (2017) Trans-methylation reactions in plants: focus on the activated methyl cycle. PHYSIOLOGIA PLANTARUM (in press)

Rahikainen M, Trotta A, Alegre S, Pascual J, Vuorinen K, Overmyer K, Moffatt B, Ravanel S, Glawischnig E, Kangasjärvi S (2017) PP2A-B'γ modulates foliar trans-methylation capacity and formation of 4-methoxy-indol-3-yl-methyl glucosinolate in Arabidopsis leaves. THE PLANT JOURNAL 89(1): 112-127    
http://dx.doi.org/10.1111/tpj.13326 [A1] (Epub 2016 Sep 6) joint paper

Ross-Elliott TJ, Jensen KH, Haaning KS, Wager BM, Knoblauch J, Howell AH, Mullendore DL, Monteith AG, Paultre D, Yan D, Otero-Perez S, Bourdon M, Sager R, Lee JY, Helariutta Y, Knoblauch M, Oparka KJ (2017) Phloem unloading in Arabidopsis roots is convective and regulated by the phloem-pole pericycle. ELIFE 6
http://dx.doi.org/10.7554/eLife.24125 [A1]

Ruzicka K, Zhang M, Campilho A, Bodi Z, Kashif M, Saleh M, Eeckhout D, El-Showk S, Li H, Zhong S, De Jaeger G, Mongan N, Hejátko J, Helariutta Y, Fray R (2017) Identification of Factors Required for m6A mRNA Methylation in Arabidopsis Reveals a Role for the Conserved E3 Ubiquitin Ligase HAKAI. NEW PHYTOL (in press)
[A1]

Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, Eswaran G, Ahonen VH, Serra JA, Asiegbu FO, de Dios Barajas-Lopez J, Blande D, Blokhina O, Blomster T, Broholm S, Brosché M, Cui F, Dardick C, Ehonen SE, Elomaa P, Escamez S, Fagerstedt KV, Fujii H, Gauthier A, Gollan PJ, Halimaa P, Heino PI, Himanen K, Hollender C, Kangasjärvi S, Kauppinen L, Kelleher CT, Kontunen-Soppela S, Koskinen JP, Kovalchuk A, Kärenlampi SO, Kärkönen AK, Lim KJ, Leppälä J, Macpherson L, Mikola J, Mouhu K, Mähönen AP, Niinemets Ü, Oksanen E, Overmyer K, Palva ET, Pazouki L, Pennanen V, Puhakainen T, Poczai P, Possen BJHM, Punkkinen M, Rahikainen MM, Rousi M, Ruonala R, van der Schoot C, Shapiguzov A, Sierla M, Sipilä TP, Sutela S, Teeri TH, Tervahauta AI, Vaattovaara A, Vahala J, Vetchinnikova L, Welling A, Wrzaczek M, Xu E, Paulin LG, Schulman AH, Lascoux M, Albert VA, Auvinen P, Helariutta Y, Kangasjärvi J (2017) Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. NATURE GENETICS 49(6):904-912
http://dx.doi.org/doi:10.1038/ng.3862 [A1] (Epub 2017 May 8) joint paper

Soitamo A, Havurinne V, Tyystjärvi E (2017) Photoinhibition in marine picocyanobacteria. PHYSIOLOGIA PLANTARUM
[A1] http://dx.doi.org/10.1111/ppl.12571 [A1] (Epub 2017 Apr 3)

Tahereh J, Durian G, Rahikainen M, Kortesniemi M, Kangasjärvi S, Sinkkonen J (2017) NMR study of age dependent metabolic adjustments in wild type and pp2a-b'γ mutant Arabidopsis thaliana. PHYTOCHEMISTRY LETTERS (in press)

Thiel K, Vuorio E, Aro EM, Kallio PT (2017) The effect of enhanced acetate influx on Synechocystis sp. PCC 6803 metabolism. MICROBIAL CELL FACTORIES 16(21): 1-12
https://dx.doi.org/10.1186/s12934-017-0640-x [A1] (Epub 2017 Feb 2) open access

Tikkanen M, Rantala S, Grieco M, Aro EM (2017) Comparative analysis of mutant plants impaired in the main regulatory mechanisms of photosynthetic light reactions - From biophysical measurements to molecular mechanisms. PLANT PHYSIOLOGY AND BIOCHEMISTRY 112:290-301
http://dx.doi.org/10.1016/j.plaphy.2017.01.014 [A1] (Epub 2017 Jan 17) open access

Volgusheva AA, Jokel M, Allahverdiyeva Y, Kukarskikh GP, Lukashev EP, Lambreva MD, Krendeleva TE, Antal TK (2017) Comparative analyses of H2 photoproduction in magnesium and sulfur starved Chlamydomonas reinhardtii cultures. PHYSIOL PLANT (in press)
http://doi.org/10.1111/ppl.12576 [A1] (Epub 2017 Apr 7)

Wallner ES, López-Salmerón V, Belevich I, Poschet G, Jung I, Grünwald K, Sevilem I, Jokitalo E, Hell R, Helariutta Y, Agustí J, Lebovka I, Greb T (2017) SL/KAR-independent SMXL proteins are central regulators of phloem formation. CURR BIOL (in press)
http://doi.org/10.1016/j.cub.2017.03.014 [A1] (Epub 2017 6 Apr)

Wittenberg G, Järvi S, Hojka M, Tóth SZ, Meyer EH, Aro EM, Schöttler MA, Bock R (2017) Identification and characterization of a stable intermediate in photosystem I assembly in tobacco. PLANT J 90(3):478-490
https://dx.doi.org/10.1111/tpj.13505[A1] (Epub 2017 Feb 5)

Vuorijoki L, Kallio P, Aro EM (2017) SRM dataset of the proteome of inactivated iron-sulfur cluster biogenesis regulator SufR in Synechocystis sp. PCC 6803. Biochim Biophys Acta. 11: 572-575
https://dx.doi.org/10.1016/j.dib.2017.03.012[A1] open access

Vuorijoki L, Tiwari A, Kallio P, Aro EM (2017) Inactivation of iron-sulfur cluster biogenesis regulator SufR in Synechocystis sp. PCC 6803 induces unique iron-dependent protein-level responses. BIOCHIM BIOPHYS ACTA 1861: 1085-1098
https://dx.doi.org/10.1016/j.bbagen.2017.02.020[A1] (Epub 2017 Feb 16) open access